BP_NRDB

NAME

bp_nrdb.PLS − a script to emulate Warren Gish’s nrdb, make a unique sequence database from a set of input databases

SYNOPSIS

Usage:
bp_nrdb.PLS [options] file1 file2 file3

Alternative usage
bp_nrdb.PLS −p [options] file1 id1 file2 id2 file3 id3

DESCRIPTION

This script will create a unique database of sequences (quasi-nonredundant). The options are:

   −o filename          − the filename the db is written (STDOUT by default)
   −a filename          − the filename to append the db to
   −l#                  − minimum required sequence length
   −i                   − do not check for duplicates
   −n#                  − max number of descriptions to report per seq
   −d#                  − delimiter to use between consecutive descriptions
   −p                   − use database id prefixes from command line

AUTHOR

Jason Stajich, jason-at-bioperl-dot-org