asn2ff − convert ASN.1 biological data to a flat format (old version)
asn2ff [−] [−A X] [−B X] [−C] [−G] [−L F] [−M] [−R] [−V F] [−a filename] [−b] [−d] [−e] [−f b/p/e/s/x/z] [−g] [−h F] [−k F] [−l filename] [−m r/d/s/c/k/l/e/p] [−n F] [−o filename] [−p F] [−q] [−r filename] [−s] [−t] [−v F] [−w] [−y] [−z]
asn2ff converts descriptions of biological sequences from NCBI’s ASN.1 format to one of several flat-file formats. This program is built around a deprecated interface; please use asn2gb(1) instead.
A summary of options is included below.
− |
Print usage message |
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−A X |
Show region starting at X (default is 0) |
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−B X |
Show region ending at X (default is last position) |
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−C |
Show Bankit comments |
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−G |
Output is one top bioseq only in genome view |
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−L F |
Use old (pre-Genbank 127.0) LOCUS line format |
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−M |
Output is map bioseqs only |
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−R |
For GenBank Release |
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−V F |
Don’t use VERSION |
−a filename
Filename for ASN.1 input (default is stdin)
−b |
Input asnfile in binary mode |
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−d |
Use SeqMgr indexing |
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−e |
Input is a Seq-entry |
−f b/p/e/s/x/z
Output Format:
b |
GenBank (default) |
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p |
GenPept |
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e |
EMBL |
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s |
PseudoEMBL |
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x |
GenBankSelect |
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z |
EMBLPEPT |
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−g |
Show gi numbers
−h F |
Hide sequence |
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−k F |
Don’t use complex sets (phy-set,mut-set, pop-set) |
−l filename
Log errors to filename
−m r/d/s/c/k/l/e/p
Output mode:
r |
release (default) |
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d |
dump |
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s |
Sequin |
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c |
Chromoscope |
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k |
dir-sub-debug |
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l |
dir-sub |
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e |
revise |
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p |
partial report |
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−n F |
Strict gene_binding
−o filename
Output Filename (default is stdout)
−p F |
Omit new gene features |
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−q |
Output is one top bioseq only |
−r filename
Output error logfile (default is stderr)
−s |
Input is a Seq-submit |
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−t |
Show verbose message text |
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−v F |
Suppress error messages |
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−w |
Use HTML output format |
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−y |
Print help format only |
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−z |
New algorithm for orgnames |
The National Center for Biotechnology Information.
asn2all(1), asn2asn(1), asn2fsa(1), asn2gb(1), asn2xml(1), asndhuff(1).