generate_histogram.pl −− Generate a histogram of Bio::DB::GFF features
generate_histogram.pl −d gadfly variation gene:curated
Use this utility to generate feature density histograms from Bio::DB::GFF databases. The result is a GFF data file that is suitable for loading with load_gff.pl.
OPTIONS
The following options are recognized:
Option Description −−−−−− −−−−−−−−−−− −−dsn <dsn> Data source (default dbi:mysql:test) −−adaptor <adaptor> Schema adaptor (default dbi::mysqlopt) −−user <user> Username for mysql authentication −−pass <password> Password for mysql authentication −−aggregator <list> Comma−separated list of aggregators
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Bio::DB::GFF
Lincoln Stein <lstein AT cshl DOT org>
Copyright (c) 2001 Cold Spring Harbor Laboratory
This library is free software; you can redistribute it and/or modify it under the same terms as Perl itself. See DISCLAIMER .txt for disclaimers of warranty.