complex − Find the linguistic complexity in nucleotide sequences
complex −sequence seqall −lwin integer −step integer −jmin integer −jmax integer −omnia toggle −sim integer −freq boolean −print boolean −outfile outfile −ujtablefile outfile −outseq seqoutall |
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complex −help |
complex is a command line program from EMBOSS (“the European Molecular Biology Open Software Suite”). It is part of the "Nucleic:Composition" command group(s).
Input section
−sequence seqall
−lwin integer
Default value: 100
−step integer
Displacement of the window over the sequence Default value: 5
−jmin integer
Default value: 4
−jmax integer
Default value: 6
Advanced section
−omnia toggle
Calculate over a set of sequences Default value: N
−sim integer
Calculate the linguistic complexity by comparison with a number of simulations having a uniform distribution of bases
−freq boolean
Execute the simulation of a sequence based on the base frequency of the original sequence Default value: N
Output section
−print boolean
Generate a file named UjTable containing the values of Uj for each word j in the real sequence(s) and in any simulated sequences Default value: N
−outfile outfile
−ujtablefile outfile
Default value: complex.ujtable
−outseq seqoutall
Bugs can be reported to the Debian Bug Tracking system (http://bugs.debian.org/emboss), or directly to the EMBOSS developers (http://sourceforge.net/tracker/?group_id=93650&atid=605031).
complex is fully documented via the tfm(1) system.
Debian−Med Packaging Team <debian−med−packaging@lists.alioth.debian.org>
Wrote the script used to autogenerate this manual page. |
Copyright © 2007 Debian-Med Packaging Team
This manual page was autogenerated from an Ajax Control Definition of the EMBOSS package. It can be redistributed under the same terms as EMBOSS itself.