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EINVERTED

NAME

einverted − Finds DNA inverted repeats

SYNOPSIS

einverted −sequence seqall −gap integer −threshold integer −match integer −mismatch integer [−maxrepeat integer] −outfile outfile −outseq seqout

einverted −help

DESCRIPTION

einverted is a command line program from EMBOSS (“the European Molecular Biology Open Software Suite”). It is part of the "Nucleic:Repeats,Nucleic:2D structure" command group(s).

OPTIONS

Input section
−sequence
seqall

Required section
−gap
integer

Default value: 12

−threshold integer

Default value: 50

−match integer

Default value: 3

−mismatch integer

Default value: −4

Additional section
−maxrepeat
integer

Maximum separation between the start of repeat and the end of the inverted repeat (the default is 2000 bases). Default value: 2000

Output section
−outfile
outfile

−outseq seqout

The sequence of the inverted repeat regions without gap characters.

BUGS

Bugs can be reported to the Debian Bug Tracking system (http://bugs.debian.org/emboss), or directly to the EMBOSS developers (http://sourceforge.net/tracker/?group_id=93650&atid=605031).

SEE ALSO

einverted is fully documented via the tfm(1) system.

AUTHOR

Debian−Med Packaging Team <debian−med−packaging@lists.alioth.debian.org>

Wrote the script used to autogenerate this manual page.

COPYRIGHT

Copyright © 2007 Debian-Med Packaging Team

This manual page was autogenerated from an Ajax Control Definition of the EMBOSS package. It can be redistributed under the same terms as EMBOSS itself.

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