einverted − Finds DNA inverted repeats
einverted −sequence seqall −gap integer −threshold integer −match integer −mismatch integer [−maxrepeat integer] −outfile outfile −outseq seqout |
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einverted −help |
einverted is a command line program from EMBOSS (“the European Molecular Biology Open Software Suite”). It is part of the "Nucleic:Repeats,Nucleic:2D structure" command group(s).
Input section
−sequence seqall
Required section
−gap integer
Default value: 12
−threshold integer
Default value: 50
−match integer
Default value: 3
−mismatch integer
Default value: −4
Additional section
−maxrepeat integer
Maximum separation between the start of repeat and the end of the inverted repeat (the default is 2000 bases). Default value: 2000
Output section
−outfile outfile
−outseq seqout
The sequence of the inverted repeat regions without gap characters.
Bugs can be reported to the Debian Bug Tracking system (http://bugs.debian.org/emboss), or directly to the EMBOSS developers (http://sourceforge.net/tracker/?group_id=93650&atid=605031).
einverted is fully documented via the tfm(1) system.
Debian−Med Packaging Team <debian−med−packaging@lists.alioth.debian.org>
Wrote the script used to autogenerate this manual page. |
Copyright © 2007 Debian-Med Packaging Team
This manual page was autogenerated from an Ajax Control Definition of the EMBOSS package. It can be redistributed under the same terms as EMBOSS itself.