NOTSEQ

NAME

notseq − Exclude a set of sequences and write out the remaining ones

SYNOPSIS

DESCRIPTION

notseq is a command line program from EMBOSS (“the European Molecular Biology Open Software Suite”). It is part of the "Edit" command group(s).

OPTIONS

Input section
−sequence seqall

Required section
−exclude string

Enter a list of sequence names or accession numbers to exclude from the sequences read in. The excluded sequences will be written to the file specified in the ´junkout´ parameter. The remainder will be written out to the file specified in the ´outseq´ parameter. The list of sequence names can be separated by either spaces or commas. The sequence names can be wildcarded. The sequence names are case independent. An example of a list of sequences to be excluded is: myseq, hs*, one two three a file containing a list of sequence names can be specified by giving the file name preceeded by a ´@´, eg: ´@names.dat´

Output section
−outseq seqoutall

−junkoutseq seqoutall

This file collects the sequences which you have excluded from the main output file of sequences. Default value: /dev/null

BUGS

Bugs can be reported to the Debian Bug Tracking system (http://bugs.debian.org/emboss), or directly to the EMBOSS developers (http://sourceforge.net/tracker/?group_id=93650&atid=605031).

SEE ALSO

notseq is fully documented via the tfm(1) system.

AUTHOR

Debian−Med Packaging Team <debian−med−packaging@lists.alioth.debian.org>

COPYRIGHT

Copyright © 2007 Debian-Med Packaging Team

This manual page was autogenerated from an Ajax Control Definition of the EMBOSS package. It can be redistributed under the same terms as EMBOSS itself.