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NPS2GPS

NAME

nps2gps − convert nucleotide-protein sets to ASN.1 genomic product sets

SYNOPSIS

nps2gps [] [−F] [−L] [−P] [−R] [−f str] [−i filename] [−o filename] [−p path] [−r path] [−x str]

DESCRIPTION

nps2gps converts NCBI Bioseq-sets from simple nucleotide-protein sets to full genomic product sets complete with mRNA transcripts, which it outputs as text ASN.1.

OPTIONS

A summary of options is included below.

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−F

Map by Feature ID

−L

Lock components in advance

−P

mRNA ID from Protein

−R

Enable Remote fetching from ID

−f str

Substring filter

−i filename

Single input file (default = stdin)

−o filename

Single output file (default = stdout)

−p path

Path to files for batch conversion

−r path

Path for results of batch conversion

−x str

File selection suffix for batch conversion (default = .ent)

AUTHOR

The National Center for Biotechnology Information.

SEE ALSO

asn2asn(1), asn2ff(1), asn2gb(1), asn2xml(1), asndhuff(1).

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