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TRNA2SAP

NAME

trna2sap − convert tRNAscan-SE output to an ASN.1 Seq-annot object

SYNOPSIS

trna2sap [] [−a] [−c str] [−f str] [−i filename] [−j] [−m str] [−n str] [−o filename] [−p dir] [−r dir] [−s] [−t str] [−u] [−x str]

DESCRIPTION

trna2sap reads a text file produced by tRNAscan-SE and produces a corresponding ASN.1 Seq-annot in the format understood by other NCBI tools.

OPTIONS

A summary of options is included below.

Print usage message

−a

Add tRNAscan-SE citation

−c str

Comment

−f str

Substring Filter

−i filename

Single Input file (standard input by default)

−j

Just produce a five-column feature table, à la trna2tbl(1).

−m str

ReMark

−n str

Annotation Name (normally “tRNA”).

−o filename

Single Output file (standard output by default)

−p dir

Path to files

−r dir

Path for Results

−s

Ignore Pseudo tRNAs

−t str

Annotation Title (normally “tRNAscan-SE”).

−u

Ignore Undetermined tRNAs

−x str

File selection suffix with −p (.trna by default).

AUTHOR

The National Center for Biotechnology Information.

SEE ALSO

sequin(1), tbl2asn(1), trna2tbl(1).

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