trna2sap − convert tRNAscan-SE output to an ASN.1 Seq-annot object
trna2sap [−] [−a] [−c str] [−f str] [−i filename] [−j] [−m str] [−n str] [−o filename] [−p dir] [−r dir] [−s] [−t str] [−u] [−x str]
trna2sap reads a text file produced by tRNAscan-SE and produces a corresponding ASN.1 Seq-annot in the format understood by other NCBI tools.
A summary of options is included below.
− |
Print usage message |
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−a |
Add tRNAscan-SE citation |
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−c str |
Comment |
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−f str |
Substring Filter |
−i filename
Single Input file (standard input by default)
−j |
Just produce a five-column feature table, à la trna2tbl(1). |
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−m str |
ReMark |
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−n str |
Annotation Name (normally “tRNA”). |
−o filename
Single Output file (standard output by default)
−p dir |
Path to files |
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−r dir |
Path for Results |
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−s |
Ignore Pseudo tRNAs |
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−t str |
Annotation Title (normally “tRNAscan-SE”). |
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−u |
Ignore Undetermined tRNAs |
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−x str |
File selection suffix with −p (.trna by default). |
The National Center for Biotechnology Information.