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WORDMATCH

NAME

wordmatch − Finds all exact matches of a given size between 2 sequences

SYNOPSIS

wordmatch −asequence sequence −bsequence sequence −wordsize integer −outfile align −aoutfeat featout −boutfeat featout

wordmatch −help

DESCRIPTION

wordmatch is a command line program from EMBOSS (“the European Molecular Biology Open Software Suite”). It is part of the "Alignment:Local" command group(s).

OPTIONS

Input section
−asequence
sequence

−bsequence sequence

Required section
−wordsize
integer

Default value: 4

Output section
−outfile
align

−aoutfeat featout

−boutfeat featout

BUGS

Bugs can be reported to the Debian Bug Tracking system (http://bugs.debian.org/emboss), or directly to the EMBOSS developers (http://sourceforge.net/tracker/?group_id=93650&atid=605031).

SEE ALSO

wordmatch is fully documented via the tfm(1) system.

AUTHOR

Debian−Med Packaging Team <debian−med−packaging@lists.alioth.debian.org>

Wrote the script used to autogenerate this manual page.

COPYRIGHT

Copyright © 2007 Debian-Med Packaging Team

This manual page was autogenerated from an Ajax Control Definition of the EMBOSS package. It can be redistributed under the same terms as EMBOSS itself.

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