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xrama

NAME

xrama − shows animated Ramachandran plots

SYNOPSIS

xrama -f traj.xtc -s topol.tpr -[no]h -nice int -b time -e time -dt time

DESCRIPTION

xrama shows a Ramachandran movie, that is, it shows the Phi/Psi angles as a function of time in an X-Window.

Static Phi/Psi plots for printing can be made with g_rama.

Some of the more common X command line options can be used:

-bg, -fg change colors, -font fontname, changes the font.

FILES

-f traj.xtc Input
Generic trajectory: xtc trr trj gro g96 pdb

-s topol.tpr Input
Generic run input: tpr tpb tpa xml

OTHER OPTIONS

-[no]h no
Print help info and quit

-nice int 0
Set the nicelevel

-b time 0
First frame (ps) to read from trajectory

-e time 0
Last frame (ps) to read from trajectory

-dt time 0
Only use frame when t MOD dt = first time (ps)

SEE ALSO

gromacs(7)

More information about the GROMACS suite is available in /usr/share/doc/gromacs or at <http://www.gromacs.org/>.

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