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BP_SPLIT_SEQ

NAME

bp_split_seq - splits a sequence into equal sized chunks with an optional
overlapping range

SYNOPSIS

bp_split_seq -c 10000 [-o 1000] [-i] -f seq.in

DESCRIPTION

The script will split sequences into chunks

Mandatory Options:

-c Desired length of the resulting sequences.
-f Input file (must be FASTA format).

Special Options:

-o Overlapping range between the resulting sequences.
-i Create an index file with the resulting sequence files. This is
useful if you want to pass this list as input arguments into
another programs (i.e. CLUSTAL, HMMER, etc.).

FEEDBACK

Mailing Lists
User feedback is an integral part of the evolution of this and other Bioperl modules. Send your comments and suggestions preferably to the Bioperl mailing list. Your participation is much appreciated.

bioperl-l AT bioperl DOT org - General discussion
http://bioperl.org/wiki/Mailing_lists - About the mailing lists

Reporting Bugs
Report bugs to the Bioperl bug tracking system to help us keep track of the bugs and their resolution. Bug reports can be submitted via the web:

https://github.com/bioperl/bioperl-live/issues

AUTHORS

Ewan Birney E<lt>birney-at-ebi.ac.ukE<gt>
Mauricio Herrera Cuadra E<lt>mauricio at intelligenomes.comE<gt>
(some enhancements)

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