prophecy − Create frequency matrix or profile from a multiple alignment
prophecy −sequence seqset −type list −datafile matrixf −name string −threshold integer −open float −extension float −outfile outfile |
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prophecy −help |
prophecy is a command line program from EMBOSS (“the European Molecular Biology Open Software Suite”). It is part of the "Nucleic:Profiles,Protein:Profiles" command group(s).
Input section
−sequence seqset
−type list
Default value: F
−datafile matrixf
Default value: @($(type) = G: Epprofile H: EBLOSUM62 F: EBLOSUM62)
Required section
−name string
Default value: mymatrix
Profile type specific options
−threshold integer
Default value: 75
Gap options
−open float
Default value: 3.0
−extension float
Default value: 0.3
Output section
−outfile outfile
Bugs can be reported to the Debian Bug Tracking system (http://bugs.debian.org/emboss), or directly to the EMBOSS developers (http://sourceforge.net/tracker/?group_id=93650&atid=605031).
prophecy is fully documented via the tfm(1) system.
Debian Med Packaging Team <debian−med−packaging@lists.alioth.debian.org>
Wrote the script used to autogenerate this manual page.
This manual page was autogenerated from an Ajax Control Definition of the EMBOSS package. It can be redistributed under the same terms as EMBOSS itself.