Bio::Graphics::Glyph::heterogeneous_segments − The "heterogeneous_segments" glyph
See L<Bio::Graphics::Panel> and L<Bio::Graphics::Glyph>.
This glyph acts like graded_segments but the bgcolor of each segment (sub-feature) can be individually set using the source field of the feature.
Each segment type color is specified using the following nomenclature:
−{source}_color => $color
For example, if the feature consists of a gene containing both confirmed and unconfirmed exons, you can make the confirmed exons green and the unconfirmed ones red this way:
−confirmed_color => 'green', −unconfirmed_color => 'red'
OPTIONS
The following options are standard among all Glyphs. See Bio::Graphics::Glyph for a full explanation.
Option Description Default −−−−−− −−−−−−−−−−− −−−−−−− −fgcolor Foreground color black −outlinecolor Synonym for −fgcolor −bgcolor Background color turquoise −fillcolor Synonym for −bgcolor −linewidth Line width 1 −height Height of glyph 10 −font Glyph font gdSmallFont −connector Connector type 0 (false) −connector_color Connector color black −label Whether to draw a label 0 (false) −description Whether to draw a description 0 (false) −hilite Highlight color undef (no color)
Please report them.
Bio::Graphics::Panel, Bio::Graphics::Glyph, Bio::Graphics::Glyph::arrow, Bio::Graphics::Glyph::cds, Bio::Graphics::Glyph::crossbox, Bio::Graphics::Glyph::diamond, Bio::Graphics::Glyph::dna, Bio::Graphics::Glyph::dot, Bio::Graphics::Glyph::ellipse, Bio::Graphics::Glyph::extending_arrow, Bio::Graphics::Glyph::generic, Bio::Graphics::Glyph::graded_segments, Bio::Graphics::Glyph::heterogeneous_segments, Bio::Graphics::Glyph::line, Bio::Graphics::Glyph::pinsertion, Bio::Graphics::Glyph::primers, Bio::Graphics::Glyph::rndrect, Bio::Graphics::Glyph::segments, Bio::Graphics::Glyph::ruler_arrow, Bio::Graphics::Glyph::toomany, Bio::Graphics::Glyph::transcript, Bio::Graphics::Glyph::transcript2, Bio::Graphics::Glyph::translation, Bio::Graphics::Glyph::triangle, Bio::DB::GFF, Bio::SeqI, Bio::SeqFeatureI, Bio::Das, GD
Lincoln Stein <lstein AT cshl DOT org>
Copyright (c) 2001 Cold Spring Harbor Laboratory
This library is free software; you can redistribute it and/or modify it under the same terms as Perl itself. See DISCLAIMER .txt for disclaimers of warranty.