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Bio::Search::BlastStatistics

NAME

Bio::Search::BlastStatistics - An object for Blast statistics

SYNOPSIS

# this is a wrapper to hold the statistics from a Blast report
my $bs = $result->get_statistics();
# you can get a statistic generically, like this:
my $kappa = $bs->get_statistic("kappa");
# or specifically, like this:
my $kappa2 = $bs->get_kappa();

DESCRIPTION

This is a basic container to hold the statistics returned from a Blast.

FEEDBACK

Mailing Lists
User feedback is an integral part of the evolution of this and other Bioperl modules. Send your comments and suggestions preferably to the Bioperl mailing list. Your participation is much appreciated.

bioperl-l AT bioperl DOT org - General discussion
http://bioperl.org/wiki/Mailing_lists - About the mailing lists

Support
Please direct usage questions or support issues to the mailing list:

bioperl-l AT bioperl DOT org

rather than to the module maintainer directly. Many experienced and reponsive experts will be able look at the problem and quickly address it. Please include a thorough description of the problem with code and data examples if at all possible.

Reporting Bugs
Report bugs to the Bioperl bug tracking system to help us keep track of the bugs and their resolution. Bug reports can be submitted via the web:

https://github.com/bioperl/bioperl-live/issues

AUTHOR - Chad Matsalla

Email bioinformatics1 at dieselwurks dot com

APPENDIX

The rest of the documentation details each of the object methods. Internal methods are usually preceded with a _

get_statistic
Title : get_statistic
Usage : $statistic_object->get_statistic($statistic_name);
Function: Get the value of a statistic named $statistic_name
Returns : A scalar that should be a string
Args : A scalar that should be a string

set_statistic
Title : set_statistic
Usage : $statistic_object->set_statistic($statistic_name => $statistic_value);
Function: Set the value of a statistic named $statistic_name to $statistic_value
Returns : Void
Args : A hash containing name=>value pairs

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