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mclindex

NAME

mclindex - a list of the utilities and modules present in the MCL distribution.

For more information, consult mclfamily(7).

Generic stuff

mcl(1)
the mcl manual page
mclfaq(7)

the mcl FAQ
mcxio(5)

the mcl matrix format specification
mcx(1)

interface to basic matrix operations
mcxdump(1)

dump matrices, optionally map indices to labels
mcxarray(1)

transform array data to MCL matrices
mcxconvert(1)

convert between ascii/binary storage types

Dealing with clustering results

clmdist(1)
compute distances between clusterings
clminfo(1)

performance measures for clusterings
clmmeet(1)

compute intersection of clusterings
clmmate(1)

compute best matches between two clusterings
clmimac(1)

Interpret Matrices (c.q. MCL iterands) As Clusterings
clmresidue(1)

extend subgraph clusterings onto encompassing graph
clmorder(1)

reorder indices to represent blocks from different clusterings
clmclose(1)

fetch connected components from graphs or subgraphs

Dealing with matrices

mcxio(5)
the mcl matrix format specification
mcx(1)

interface to basic matrix operations
mcxsubs(1)

extract submatrices by specifying sets of nodes and clusters
mcxmap(1)

remap matrix indices / relabel graph nodes

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