chainsaw

NAME

chainsaw − Cut a gene tree based on a reconciliation

SYNOPSIS

chainsaw [OPTIONS] reconciled-gene-tree species-tree

DESCRIPTION

reconciled-gene-tree is the filename of the file containing trees in PRIME format. Notice that the node id is optional and if left out all species nodeswill be used recursively.

species-tree is the species tree

OPTIONS

−V, −−version

Print version and exit

−g, −−guest−tree−format primeOrHybrid|inputxml

The input format. Default is primeOrHybrid

−h, −−host−tree−format primeOrHybrid|inputxml

The input format of the host tree. Default is primeOrHybrid

−x, −−node−name=STRING

A named species node to cut at

−i, −−node−id=INT

The numerical id of a species node to cut at

EXIT STATUS

URL

The prime−phylo home page: http://prime.sbc.su.se

SEE ALSO

primeDTLSR(1), primeDLRS(1), primeGEM(1), showtree(1), reconcile(1), reroot(1), tree2leafnames(1), treesize(1)