Honey − genomic structural variation discovery
Honey {subcommand}[options]
PBHoney is an implementation of two variant-identification approaches designed to exploit the high mappability of long reads (i.e., greater than 10,000 bp). PBHoney considers both intra-read discordance and soft-clipped tails of long reads to identify structural variants.
For a complete description, see the help menu
−h, −−help
Show summary of options.
blasr(1)
/usr/share/doc/pbhoney/HoneyReadme.txt