bowtie-align − ultrafast memory-efficient short read aligner
usage: bowtie [−h] [−b | −i] [−−verbose] [−−debug] [−−large−index]
[−−index INDEX]
optional arguments:
−h, −−help
show this help message and exit
−b, −−build |
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−i, −−inspect |
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−−verbose |
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−−debug |
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−−large−index |
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−−index INDEX |
64−bit Built on Debian−reproducible Thu, 08 Jun 2017 15:24:17 +0200 Compiler: gcc version 6.3.0 20170519 Options: −O3 −Wl,−−hash−style=both −DWITH_TBB −DNO_SPINLOCK −DWITH_QUEUELOCK=1 −Wdate−time −D_FORTIFY_SOURCE=2 −g −O2 −fdebug−prefix−map=.=. −fstack−protector−strong −Wformat −Werror=format−security −g −O2 −fdebug−prefix−map=.=. −fstack−protector−strong −Wformat −Werror=format−security −Wl,−Bsymbolic−functions −Wl,−z,relro −Wl,−z,now Sizeof {int, long, long long, void*, size_t, off_t}: {4, 8, 8, 8, 8, 8}