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BOWTIE-ALIGN

NAME

bowtie-align − ultrafast memory-efficient short read aligner

DESCRIPTION

usage: bowtie [−h] [−b | −i] [−−verbose] [−−debug] [−−large−index]

[−−index INDEX]

optional arguments:
−h
, −−help

show this help message and exit

−b, −−build

−i, −−inspect

−−verbose

−−debug

−−large−index

−−index INDEX

64−bit Built on Debian−reproducible Thu, 08 Jun 2017 15:24:17 +0200 Compiler: gcc version 6.3.0 20170519 Options: −O3 −Wl,−−hash−style=both −DWITH_TBB −DNO_SPINLOCK −DWITH_QUEUELOCK=1 −Wdate−time −D_FORTIFY_SOURCE=2 −g −O2 −fdebug−prefix−map=.=. −fstack−protector−strong −Wformat −Werror=format−security −g −O2 −fdebug−prefix−map=.=. −fstack−protector−strong −Wformat −Werror=format−security −Wl,−Bsymbolic−functions −Wl,−z,relro −Wl,−z,now Sizeof {int, long, long long, void*, size_t, off_t}: {4, 8, 8, 8, 8, 8}

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