csv2mipe.pl − Generates MIPE file based on 3 tab−delimited files
based on MIPE version v1.1
arguments: * tab−delimited file with PCR−level data
* tab−delimited file with SNP−level data
* tab−delimited file with assay−level data
Columns in file with PCR−level data: pcr_id pcr_modified (might be multiple, divided by semi−colon ";") pcr_project (might be multiple, divided by semi−colon ";") pcr_researcher (might be multiple, divided by semi−colon ";") pcr_species source_type source_id design_seq primer1_oligo primer1_seq primer1_tm primer2_oligo primer2_seq primer2_tm design_remark (might be multiple, divided by semi−colon ";") use_seq use_revcomp use_remark (might be multiple, divided by semi−colon ";") pcr_remark (might be multiple, divided by semi−colon ";") Columns in file with SNP−level data: pcr_id snp_id snp_pos snp_amb snp_remark (might be multiple, divided by semi−colon ";") Columns in file with assay−level data: pcr_id snp_id assay_id assay_type assay_enzyme assay_oligo assay_specific assay_tail assay_strand assay_remark (might be multiple, divided by semi−colon ";")
csv2mipe.pl <pcr_file.csv> <snp_file.csv> <assay_file.csv>
See http://mipe.sourceforge.net
Jan Aerts (jan DOT aerts AT bbsrc DOT ac DOT uk)