fastautils

NAME

fastautils − FASTA format file manipulation utilities

SYNOPSIS

fastachecksum [ options ] <input file>

fastaclean

fastaclip

fastacomposition

fastadiff

fastaexplode

fastafetch

fastahardmask

fastaindex

fastalength

fastanrdb

fastaoverlap

fastareformat

fastaremove

fastarevcomp

fastasoftmask

fastasort

fastasplit

fastasubseq

fastatranslate

fastavalidcds

DESCRIPTION

These are utilities for the manipulation of FASTA format sequence databases which are distributed with the exonerate sequence alignment program.

ENVIRONMENT

Not documented yet.

EXAMPLES

fastalength sequence.fasta

blah blah

VERSION

This documentation accompanies version 2.2.0 of the exonerate package.

AUTHOR

Guy St.C. Slater. <guy AT ebi DOT ac DOT uk>.

See the AUTHORS file accompanying the source code for a list of contributors.

AVAILABILITY

This source code for the exonerate package is available under the terms of the GNU general public licence.

Please see the file COPYING which was distrubuted with this package, or http://www.gnu.org/licenses/gpl.txt for details.

This package has been developed as part of the ensembl project. Please see http://www.ensembl.org/ for more information.

SEE ALSO

exonerate(1),e-PCR