fastx_trimmer − FASTA/Q Trimmer
usage: fastx_trimmer [−h] [−f N] [−l N] [−t N] [−m MINLEN] [−z] [−v] [−i INFILE] [−o OUTFILE] Part of FASTX Toolkit 0.0.14 by A. Gordon (assafgordon AT gmail DOT com)
[−h] |
= This helpful help screen. |
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[−f N] |
= First base to keep. Default is 1 (=first base). |
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[−l N] |
= Last base to keep. Default is entire read. |
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[−t N] |
= Trim N nucleotides from the end of the read. |
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’−t’ |
can not be used with ’−l’ and ’−f’. |
[−m MINLEN]
= With [−t], discard reads shorter than MINLEN.
[−z] |
= Compress output with GZIP. |
[−i INFILE]
= FASTA/Q input file. default is STDIN.
[−o OUTFILE] = FASTA/Q output file. default is STDOUT.
The quality of this automatically generated manpage might be insufficient. It is suggested to visit
http://hannonlab.cshl.edu/fastx_toolkit/commandline.html
to get a better layout as well as an overview about connected FASTX tools.