fdolpenny − Penny algorithm Dollo or polymorphism
fdolpenny −infile discretestates [−weights properties] [−ancfile properties] [−thresh toggle] −threshold float [−howmany integer] [−howoften integer] [−simple boolean] [−method list] −outfile outfile [−trout toggle] −outtreefile outfile [−printdata boolean] [−progress boolean] [−treeprint boolean] [−ancseq boolean] [−stepbox boolean] |
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fdolpenny −help |
fdolpenny is a command line program from EMBOSS (“the European Molecular Biology Open Software Suite”). It is part of the "Phylogeny:Discrete characters" command group(s).
Input section
−infile discretestates
File containing one or more data sets
−weights properties
−ancfile properties
Additional section
−thresh toggle
Default value: N
−threshold float
Default value: 1
−howmany integer
Default value: 1000
−howoften integer
Default value: 100
−simple boolean
Default value: Y
−method list
Default value: d
Output section
−outfile outfile
−trout toggle
Default value: Y
−outtreefile outfile
−printdata boolean
Default value: N
−progress boolean
Default value: Y
−treeprint boolean
Default value: Y
−ancseq boolean
Default value: N
−stepbox boolean
Default value: N
Bugs can be reported to the Debian Bug Tracking system (http://bugs.debian.org/emboss), or directly to the EMBOSS developers (http://sourceforge.net/tracker/?group_id=93650&atid=605031).
fdolpenny is fully documented via the tfm(1) system.
Debian Med Packaging Team <debian−med−packaging@lists.alioth.debian.org>
Wrote the script used to autogenerate this manual page.
This manual page was autogenerated from an Ajax Control Definition of the EMBOSS package. It can be redistributed under the same terms as EMBOSS itself.