genome music bmr − Calculate gene coverages and background mutation rates.
This document describes genome music bmr version 0.04 (2016−01−01 at 23:10:18)
genome music bmr ...
These tools are part of the MuSiC suite.
GENERAL
calc-bmr
Calculates mutation rates given per-gene coverage (from "music bmr
calc-covg"), and a mutation list
calc-covg
Uses calcRoiCovg.c to count covered bases per-gene for each given
tumor-normal pair of BAMs.
calc-covg-helper
Uses calcRoiCovg.c to count covered bases per-gene for a
tumor-normal pair of BAMs.
calc-wig-covg
Count covered bases per-gene for each given wiggle track format
file.
Copyright (C) 2010−2011 Washington University in St. Louis.
It is released under the Lesser GNU Public License ( LGPL ) version 3. See the associated LICENSE file in this distribution.
Cyriac Kandoth, Ph.D.
genome-music-bmr-calc-covg(1), genome-music-bmr-calc-bmr(1), genome-music(1), genome(1)