kmc_dump - list k-mers from kmc-generated database
KMC’s end product is a database of k-mers stored in compact binary form. The kmc_dump program allows the production of a textual list of k-mers together with their counters for the analysis ran
kmc_dump [options] <kmc_database> <output_file>
−ci<value> − print k−mers occurring less than <value> times
−cx<value> − print k−mers occurring more of than <value> times
Parameters:
<kmc_database> − kmer_counter’s output
kmc_dump was originally written by:
Sebastian Deorowicz (sebastian DOT deorowicz AT polsl DOT pl)
Marek Kokot
Szymon Grabowski
Agnieszka Debudaj-Grabysz
KMC is a free software distributed under GNU GPL3 licence for academic, research, and commercial use.