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KMC_TOOLS−COMPACT

NAME

kmc_tools−compact − remove counters of k−mers

SYNOPSIS

kmc_tools compact <inputdb> [input_params] <output>

DESCRIPTION

This command removes counters from the database and stores only k−mers.

OPTIONS

For each input there are additional parameters:

−ci<value>

exclude k−mers occurring less than <value> times

−cx<value>

exclude k−mers occurring more of than <value> times

EXAMPLE

kmc_tools compact wy_kmc2 −ci3 −cx1000 wy_kmc1

AUTHOR

KMC was originally written by:

• Sebastian Deorowicz (sebastian DOT deorowicz AT polsl DOT pl 〈URL: mailto:sebastian.deorowicz@polsl.pl 〉)

• Marek Kokot

• Szymon Grabowski

• Agnieszka Debudaj−Grabysz

COPYING

KMC is a free software distributed under GNU GPL3 licence for academic, research, and commercial use.

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