kmc_tools−compact − remove counters of k−mers
kmc_tools compact <inputdb> [input_params] <output>
This command removes counters from the database and stores only k−mers.
For each input there are additional parameters:
−ci<value>
exclude k−mers occurring less than <value> times
−cx<value>
exclude k−mers occurring more of than <value> times
kmc_tools compact wy_kmc2 −ci3 −cx1000 wy_kmc1
KMC was originally written by:
• Sebastian Deorowicz (sebastian DOT deorowicz AT polsl DOT pl 〈URL: mailto:sebastian.deorowicz@polsl.pl 〉)
• Marek Kokot
• Szymon Grabowski
• Agnieszka Debudaj−Grabysz
KMC is a free software distributed under GNU GPL3 licence for academic, research, and commercial use.