sourCEntral - mobile manpages

pdf

KMC_TOOLS−DUMP

NAME

kmc_tools−dump − dump k−mers and counters to text file

SYNOPSIS

kmc_tools dump [dump_params] <inputdb> [input_params] <output>

DESCRIPTION

This command produces a text dump of the KMC database.

OPTIONS

For each input there are additional parameters:

−ci<value>

exclude k−mers occurring less than <value> times

−cx<value>

exclude k−mers occurring more of than <value> times

Dump operation parameters:

−s

sorted output

EXAMPLE

kmc_tools dump wy_kmc2 −ci3 −cx1000 dump.txt

AUTHOR

KMC was originally written by:

• Sebastian Deorowicz (sebastian DOT deorowicz AT polsl DOT pl 〈URL: mailto:sebastian.deorowicz@polsl.pl 〉)

• Marek Kokot

• Szymon Grabowski

• Agnieszka Debudaj−Grabysz

COPYING

KMC is a free software distributed under GNU GPL3 licence for academic, research, and commercial use.

pdf