kmc_tools−sort − sort KMC databases
kmc_tools sort <inputdb> [input_params] <output> [output_params]
Converts database produced by KMC2.x to KMC1.x database format (which contains k−mers in sorted order)
For each input there are additional parameters:
−ci<value>
exclude k−mers occurring less than <value> times
−cx<value>
exclude k−mers occurring more of than <value> times
For output there are additional parameters:
−cs<value>
maximal value of a counter
kmc_tools sort wy_kmc2 −ci3 −cx1000 wy_kmc1 −cs255
KMC was originally written by:
• Sebastian Deorowicz (sebastian DOT deorowicz AT polsl DOT pl 〈URL: mailto:sebastian.deorowicz@polsl.pl 〉)
• Marek Kokot
• Szymon Grabowski
• Agnieszka Debudaj−Grabysz
KMC is a free software distributed under GNU GPL3 licence for academic, research, and commercial use.