KMC_TOOLS−SORT

NAME

kmc_tools−sort − sort KMC databases

SYNOPSIS

kmc_tools sort <inputdb> [input_params] <output> [output_params]

DESCRIPTION

Converts database produced by KMC2.x to KMC1.x database format (which contains k−mers in sorted order)

OPTIONS

For each input there are additional parameters:

−ci<value>

exclude k−mers occurring less than <value> times

−cx<value>

exclude k−mers occurring more of than <value> times

For output there are additional parameters:

−cs<value>

maximal value of a counter

EXAMPLE

kmc_tools sort wy_kmc2 −ci3 −cx1000 wy_kmc1 −cs255

AUTHOR

KMC was originally written by:

• Sebastian Deorowicz (sebastian DOT deorowicz AT polsl DOT pl 〈URL: mailto:sebastian.deorowicz@polsl.pl 〉)

• Marek Kokot

• Szymon Grabowski

• Agnieszka Debudaj−Grabysz

COPYING

KMC is a free software distributed under GNU GPL3 licence for academic, research, and commercial use.