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MHAP

NAME

mhap − probabilistic sequence overlapping

SYNOPSIS

mhap −s<fasta/dat from/self file> [−q<fasta/dat to file>] [−f<kmer filter list, must be sorted>]
java −server −Xmx
<memory> −jar $(which mhap) −s<fasta/dat from/self file> [−q<fasta/dat to file>] [−f<kmer filter list, must be sorted>]
generate precomputed binaries:
java −server −Xmx
<memory> −jar $(which mhap) −p<directory of fasta files> −q <output directory> [−f<kmer filter list, must be sorted>]

DESCRIPTION

MHAP (MinHash Alignment Protocol) is a tool for finding overlaps of long−read sequences (such as PacBio or Nanopore) in bioinformatics.

OPTIONS

−h −−help

Show summary of available options.

−−version

Displays the version.

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