mhap − probabilistic sequence overlapping
mhap −s<fasta/dat from/self file> [−q<fasta/dat to file>] [−f<kmer filter list, must be sorted>]
java −server −Xmx<memory> −jar $(which mhap) −s<fasta/dat from/self file> [−q<fasta/dat to file>] [−f<kmer filter list, must be sorted>]
generate precomputed binaries:
java −server −Xmx<memory> −jar $(which mhap) −p<directory of fasta files> −q <output directory> [−f<kmer filter list, must be sorted>]
MHAP (MinHash Alignment Protocol) is a tool for finding overlaps of long−read sequences (such as PacBio or Nanopore) in bioinformatics.
−h −−help
Show summary of available options.
−−version
Displays the version.