parse-examl − transform an alignment file in relaxed phylip format into a binary file format that can be read by ExaML
parse−examl −s sequenceFileName −n outputFileName −m substitutionModel [−c] [−q] [−h]
−m Model of
Nucleotide or Amino Acid Substitution:
For Binary data use: BIN For DNA data use: DNA For AA data use: PROT
−c |
disable site pattern compression |
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−q |
Specify the file name which contains the assignment of models to alignment partitions for multiple models of substitution. For the syntax of this file please consult the manual. |
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−h |
Display this help message. |
This manpage was written by Andreas Tille for the Debian distribution and can be used for any other usage of the program.