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PARSE-EXAML

NAME

parse-examl − transform an alignment file in relaxed phylip format into a binary file format that can be read by ExaML

SYNOPSIS

parse−examl −s sequenceFileName −n outputFileName −m substitutionModel [−c] [−q] [−h]

OPTIONS

−m Model of

Nucleotide or Amino Acid Substitution:

For Binary data use: BIN For DNA data use: DNA For AA data use: PROT

−c

disable site pattern compression

−q

Specify the file name which contains the assignment of models to alignment partitions for multiple models of substitution. For the syntax of this file please consult the manual.

−h

Display this help message.

AUTHOR

This manpage was written by Andreas Tille for the Debian distribution and can be used for any other usage of the program.

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