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PMRNA

NAME

pmrna − filter out all but the primary isoform from each gene of the input

SYNOPSIS

pmrna [options] < annot.gff3 > new.gff3

DESCRIPTION

Options:
−h
|−−help

print this help message and exit

−i|−−introns

flag indicating that introns are declared explicitly and do not need to be inferred from exon features; default is to infer introns

−l|−−locus

report a single representative mRNA for each locus instead of each gene

−m|−−map: FILE

write each gene/mRNA mapping to the specified file

−p|−−pseudogenes

disable pseudogene detection and correction

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