qlob.pl −− run quick mursaki compare
qlob.pl [options] {genome list...}
qlob is a frontend to murasaki (through qsub if it’s available). It automatically generates an output name for you based on the input files, sets a more reasonable memory limit, runs the job, and generates dot-plot outputs.
In addition to the standard Murasaki options (see murasaki −−help), qlob supports some some options of its own:
Options: −P uses an old pattern of 11111100100001111100000100101111 −−target=<hostname> requests the job be run on hostname −n|−−name name for the job (allows overwriting of old output) −m|−−mem specifies a memory requirement to pass to qsub (default 4gb) −−mpi=N use MPI across N machines (sets ppn=4 also) −−myrinet require myrinet nodes −−kogfile=<file> Run filter.pl to score alignment using <file>
This program runs several sequences through murasaki. When run on an hpc machine it submits the job via qsub.