REAPR−GAPRESIZE

NAME

reapr−gapresize − calculates gap sizes based on read mapping

SYNOPSIS

reapr gapresize [options] <assembly.fasta> <in.bam> <avg−fragment−length> <max−fragment−length> <outfileprefix>

OPTIONS

−g <int>

Only consider gaps of at least this length [1]

SEE ALSO

reapr(1)