sim2gff − Converts SIM file into GFF formatted records
sim2gff [-frxyHh] sim_file > gff_file
This manual page documents briefly the sim2gff command.
sim2gff is a program written in Perl that converts SIM file into GFF formatted records (for use with gff2aplot and gff2javaplot).
−h, −−help
Show summary of options.
−f |
Output is written to a file named <sim_file>.gff. |
||
−r |
Interchange the order of sequences (Seq1 on y-axis, Seq2 on x-axis). |
−x <name>
Specify the species name for species1 (default: "Seq1").
−y <name>
Specify the species name for species2 (default: "Seq2").
−H |
Use the fasta file headers for species labels. |
The following perl-like exit status are returned:
0 Error
1 Successful completion
ali2gff(1), blat2gff(1), gff2aplot(1), parseblast(1).
sim2gff was written by Thomas Wiehe <twiehe AT imb-jena DOT de>.
This manual page was written by Nelson A. de Oliveira <naoliv AT gmail DOT com>, for the Debian project (but may be used by others).