snap-hmm − Semi-HMM-based Nucleic Acid Parser
snap-hmm [options] <HMM file> <FASTA file> [options]
−help |
report useful information |
−lcmask
treat lowercase as N
−plus |
predict on plus strand only |
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−minus |
predict on minus strand only |
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−gff |
output annotation as GFF |
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−ace |
output annotation as ACED |
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−quiet |
do not send progress to STDERR |
−aa <file>
create FASTA file of proteins
−tx <file>
create FASTA file of transcripts
−xdef <file>
external definitions
−name <string>
name for the gene [default snap]