Last Change: 2018-09-07, 16:50
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ali2gff − Module to translate a MUMmer output files into gff formatted output.
ali2gff [-r] [-t <.|0|1|2>] [-x <name>] [-y <name>] [-H] [-f] [-h] <MUMmer_output_file>
−h, −−help
Show summary of options.
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−r |
Interchange the order of sequences (sequence 1 on y-axis, sequence 2 on x-axis). |
−t <.|0|1|2>
Put label ’frame’ in gff output.
−x <name>
Specify the species name for species1 (default: "Seq1").
−y <name>
Specify the species name for species2 (default: "Seq2").
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−i |
Ignore full sequence identities. |
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−f |
Write output to file. |
blat2gff(1), gff2aplot(1), parseblast(1), sim2gff(1).
ali2gff was written by Steffi Gebauer-Jung.
This manual page was written by Nelson A. de Oliveira <naoliv AT gmail DOT com>, for the Debian project (but may be used by others).