alignment−chop−internal

NAME

alignment−chop−internal − Remove ancestral sequences from an alignment.

SYNOPSIS

alignment−chop−internal [OPTIONS] < alignments−file

DESCRIPTION

Remove ancestral sequences from an alignment.

ALLOWED OPTIONS:

−h, −−help

produce help message

−−align arg

file with sequences and initial alignment

−−alphabet arg

set to 'Codons' to prefer codon alphabets

−−tree arg

file with tree that specifies leaves to keep

−N arg, −−nleaves arg

number of sequences to keep

REPORTING BUGS:

BAli−Phy online help: <http://www.bali-phy.org/docs.php>.

Please send bug reports to <bali-phy-users AT googlegroups DOT com>.

AUTHORS

Benjamin Redelings.