Last Change: 2018-09-07, 16:50
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weight − calculates sequence weights for an alignment
weight [-options] <alignment file>
This manual page documents briefly the weight command.
weight is a program that calculates weights for a sequence alignment.
Available options:
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−b <f> |
Use BLOSUM weighting scheme at <f> fractional identity. |
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−f <f> |
Filter out seqs w/ fractional ident > <x> [0-1]. |
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−h |
Help; print version and usage info. |
−o <file>
Save weight-annotated alignment in <outfile>.
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−p |
Use position based weight scheme (Henikoff & Henikoff). |
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−s <n> |
Sample <n> sequences at random into a new alignment. |
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−v |
Use Voronoi weight scheme (Sibbald & Argos). |
−−informat <s>
Specify alignment file format <s>.
Allowed formats: SELEX, MSF, Clustal, a2m, PHYLIP.
−−quiet
Suppress verbose banner.
afetch(1), alistat(1), compalign(1), compstruct(1), revcomp(1), seqsplit(1), seqstat(1), sfetch(1), shuffle(1), sindex(1), sreformat(1), stranslate(1),
Sean Eddy
HHMI/Department of Genetics
Washington University School of Medicine
4444 Forest Park Blvd., Box 8510
St Louis, MO 63108 USA
Phone: 1-314-362-7666
FAX : 1-314-362-2157
Email: eddy AT genetics DOT wustl DOT edu
This manual page was written by Nelson A. de Oliveira <naoliv AT gmail DOT com>,
for the Debian project (but may be used by others).